refactor io

pull/756/head
Hui Zhang 3 years ago
parent ecfac8ca73
commit 44ec19317f

@ -11,80 +11,20 @@
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and # See the License for the specific language governing permissions and
# limitations under the License. # limitations under the License.
import numpy as np
from paddle.io import DataLoader from paddle.io import DataLoader
from deepspeech.frontend.utility import read_manifest from deepspeech.frontend.utility import read_manifest
from deepspeech.io.batchfy import make_batchset from deepspeech.io.batchfy import make_batchset
from deepspeech.io.dataset import CustomConverter
from deepspeech.io.dataset import TransformDataset from deepspeech.io.dataset import TransformDataset
from deepspeech.io.utility import LoadInputsAndTargets from deepspeech.io.reader import LoadInputsAndTargets
from deepspeech.io.utility import pad_list
from deepspeech.utils.log import Log from deepspeech.utils.log import Log
__all__ = ["CustomConverter", "BatchDataLoader"] __all__ = ["BatchDataLoader"]
logger = Log(__name__).getlog() logger = Log(__name__).getlog()
class CustomConverter():
"""Custom batch converter.
Args:
subsampling_factor (int): The subsampling factor.
dtype (np.dtype): Data type to convert.
"""
def __init__(self, subsampling_factor=1, dtype=np.float32):
"""Construct a CustomConverter object."""
self.subsampling_factor = subsampling_factor
self.ignore_id = -1
self.dtype = dtype
def __call__(self, batch):
"""Transform a batch and send it to a device.
Args:
batch (list): The batch to transform.
Returns:
tuple(paddle.Tensor, paddle.Tensor, paddle.Tensor)
"""
# batch should be located in list
assert len(batch) == 1
(xs, ys), utts = batch[0]
# perform subsampling
if self.subsampling_factor > 1:
xs = [x[::self.subsampling_factor, :] for x in xs]
# get batch of lengths of input sequences
ilens = np.array([x.shape[0] for x in xs])
# perform padding and convert to tensor
# currently only support real number
if xs[0].dtype.kind == "c":
xs_pad_real = pad_list([x.real for x in xs], 0).astype(self.dtype)
xs_pad_imag = pad_list([x.imag for x in xs], 0).astype(self.dtype)
# Note(kamo):
# {'real': ..., 'imag': ...} will be changed to ComplexTensor in E2E.
# Don't create ComplexTensor and give it E2E here
# because torch.nn.DataParellel can't handle it.
xs_pad = {"real": xs_pad_real, "imag": xs_pad_imag}
else:
xs_pad = pad_list(xs, 0).astype(self.dtype)
# NOTE: this is for multi-output (e.g., speech translation)
ys_pad = pad_list(
[np.array(y[0][:]) if isinstance(y, tuple) else y for y in ys],
self.ignore_id)
olens = np.array(
[y[0].shape[0] if isinstance(y, tuple) else y.shape[0] for y in ys])
return utts, xs_pad, ilens, ys_pad, olens
class BatchDataLoader(): class BatchDataLoader():
def __init__(self, def __init__(self,
json_file: str, json_file: str,

@ -17,9 +17,13 @@ from paddle.io import Dataset
from yacs.config import CfgNode from yacs.config import CfgNode
from deepspeech.frontend.utility import read_manifest from deepspeech.frontend.utility import read_manifest
from deepspeech.io.utility import pad_list
from deepspeech.utils.log import Log from deepspeech.utils.log import Log
__all__ = ["ManifestDataset", "TripletManifestDataset", "TransformDataset"] __all__ = [
"ManifestDataset", "TripletManifestDataset", "TransformDataset",
"CustomConverter"
]
logger = Log(__name__).getlog() logger = Log(__name__).getlog()
@ -76,12 +80,18 @@ class ManifestDataset(Dataset):
Args: Args:
manifest_path (str): manifest josn file path manifest_path (str): manifest josn file path
max_input_len ([type], optional): maximum output seq length, in seconds for raw wav, in frame numbers for feature data. Defaults to float('inf'). max_input_len ([type], optional): maximum output seq length,
min_input_len (float, optional): minimum input seq length, in seconds for raw wav, in frame numbers for feature data. Defaults to 0.0. in seconds for raw wav, in frame numbers for feature data. Defaults to float('inf').
max_output_len (float, optional): maximum input seq length, in modeling units. Defaults to 500.0. min_input_len (float, optional): minimum input seq length,
min_output_len (float, optional): minimum input seq length, in modeling units. Defaults to 0.0. in seconds for raw wav, in frame numbers for feature data. Defaults to 0.0.
max_output_input_ratio (float, optional): maximum output seq length/output seq length ratio. Defaults to 10.0. max_output_len (float, optional): maximum input seq length,
min_output_input_ratio (float, optional): minimum output seq length/output seq length ratio. Defaults to 0.05. in modeling units. Defaults to 500.0.
min_output_len (float, optional): minimum input seq length,
in modeling units. Defaults to 0.0.
max_output_input_ratio (float, optional): maximum output seq length/output seq length ratio.
Defaults to 10.0.
min_output_input_ratio (float, optional): minimum output seq length/output seq length ratio.
Defaults to 0.05.
""" """
super().__init__() super().__init__()
@ -118,6 +128,65 @@ class TripletManifestDataset(ManifestDataset):
"text1"] "text1"]
class CustomConverter():
"""Custom batch converter.
Args:
subsampling_factor (int): The subsampling factor.
dtype (np.dtype): Data type to convert.
"""
def __init__(self, subsampling_factor=1, dtype=np.float32):
"""Construct a CustomConverter object."""
self.subsampling_factor = subsampling_factor
self.ignore_id = -1
self.dtype = dtype
def __call__(self, batch):
"""Transform a batch and send it to a device.
Args:
batch (list): The batch to transform.
Returns:
tuple(paddle.Tensor, paddle.Tensor, paddle.Tensor)
"""
# batch should be located in list
assert len(batch) == 1
(xs, ys), utts = batch[0]
# perform subsampling
if self.subsampling_factor > 1:
xs = [x[::self.subsampling_factor, :] for x in xs]
# get batch of lengths of input sequences
ilens = np.array([x.shape[0] for x in xs])
# perform padding and convert to tensor
# currently only support real number
if xs[0].dtype.kind == "c":
xs_pad_real = pad_list([x.real for x in xs], 0).astype(self.dtype)
xs_pad_imag = pad_list([x.imag for x in xs], 0).astype(self.dtype)
# Note(kamo):
# {'real': ..., 'imag': ...} will be changed to ComplexTensor in E2E.
# Don't create ComplexTensor and give it E2E here
# because torch.nn.DataParellel can't handle it.
xs_pad = {"real": xs_pad_real, "imag": xs_pad_imag}
else:
xs_pad = pad_list(xs, 0).astype(self.dtype)
# NOTE: this is for multi-output (e.g., speech translation)
ys_pad = pad_list(
[np.array(y[0][:]) if isinstance(y, tuple) else y for y in ys],
self.ignore_id)
olens = np.array(
[y[0].shape[0] if isinstance(y, tuple) else y.shape[0] for y in ys])
return utts, xs_pad, ilens, ys_pad, olens
class TransformDataset(Dataset): class TransformDataset(Dataset):
"""Transform Dataset. """Transform Dataset.

@ -0,0 +1,409 @@
# Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from collections import OrderedDict
import kaldiio
import numpy as np
import soundfile
from deepspeech.frontend.augmentor.augmentation import AugmentationPipeline
from deepspeech.utils.log import Log
__all__ = ["LoadInputsAndTargets"]
logger = Log(__name__).getlog()
class LoadInputsAndTargets():
"""Create a mini-batch from a list of dicts
>>> batch = [('utt1',
... dict(input=[dict(feat='some.ark:123',
... filetype='mat',
... name='input1',
... shape=[100, 80])],
... output=[dict(tokenid='1 2 3 4',
... name='target1',
... shape=[4, 31])]]))
>>> l = LoadInputsAndTargets()
>>> feat, target = l(batch)
:param: str mode: Specify the task mode, "asr" or "tts"
:param: str preprocess_conf: The path of a json file for pre-processing
:param: bool load_input: If False, not to load the input data
:param: bool load_output: If False, not to load the output data
:param: bool sort_in_input_length: Sort the mini-batch in descending order
of the input length
:param: bool use_speaker_embedding: Used for tts mode only
:param: bool use_second_target: Used for tts mode only
:param: dict preprocess_args: Set some optional arguments for preprocessing
:param: Optional[dict] preprocess_args: Used for tts mode only
"""
def __init__(
self,
mode="asr",
preprocess_conf=None,
load_input=True,
load_output=True,
sort_in_input_length=True,
preprocess_args=None,
keep_all_data_on_mem=False, ):
self._loaders = {}
if mode not in ["asr"]:
raise ValueError("Only asr are allowed: mode={}".format(mode))
if preprocess_conf is not None:
self.preprocessing = AugmentationPipeline(preprocess_conf)
logging.warning(
"[Experimental feature] Some preprocessing will be done "
"for the mini-batch creation using {}".format(
self.preprocessing))
else:
# If conf doesn't exist, this function don't touch anything.
self.preprocessing = None
self.mode = mode
self.load_output = load_output
self.load_input = load_input
self.sort_in_input_length = sort_in_input_length
if preprocess_args is None:
self.preprocess_args = {}
else:
assert isinstance(preprocess_args, dict), type(preprocess_args)
self.preprocess_args = dict(preprocess_args)
self.keep_all_data_on_mem = keep_all_data_on_mem
def __call__(self, batch, return_uttid=False):
"""Function to load inputs and targets from list of dicts
:param List[Tuple[str, dict]] batch: list of dict which is subset of
loaded data.json
:param bool return_uttid: return utterance ID information for visualization
:return: list of input token id sequences [(L_1), (L_2), ..., (L_B)]
:return: list of input feature sequences
[(T_1, D), (T_2, D), ..., (T_B, D)]
:rtype: list of float ndarray
:return: list of target token id sequences [(L_1), (L_2), ..., (L_B)]
:rtype: list of int ndarray
"""
x_feats_dict = OrderedDict() # OrderedDict[str, List[np.ndarray]]
y_feats_dict = OrderedDict() # OrderedDict[str, List[np.ndarray]]
uttid_list = [] # List[str]
for uttid, info in batch:
uttid_list.append(uttid)
if self.load_input:
# Note(kamo): This for-loop is for multiple inputs
for idx, inp in enumerate(info["input"]):
# {"input":
# [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# "name": "input1", ...}], ...}
x = self._get_from_loader(
filepath=inp["feat"],
filetype=inp.get("filetype", "mat"))
x_feats_dict.setdefault(inp["name"], []).append(x)
if self.load_output:
for idx, inp in enumerate(info["output"]):
if "tokenid" in inp:
# ======= Legacy format for output =======
# {"output": [{"tokenid": "1 2 3 4"}])
x = np.fromiter(
map(int, inp["tokenid"].split()), dtype=np.int64)
else:
# ======= New format =======
# {"input":
# [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# "name": "target1", ...}], ...}
x = self._get_from_loader(
filepath=inp["feat"],
filetype=inp.get("filetype", "mat"))
y_feats_dict.setdefault(inp["name"], []).append(x)
if self.mode == "asr":
return_batch, uttid_list = self._create_batch_asr(
x_feats_dict, y_feats_dict, uttid_list)
else:
raise NotImplementedError(self.mode)
if self.preprocessing is not None:
# Apply pre-processing all input features
for x_name in return_batch.keys():
if x_name.startswith("input"):
return_batch[x_name] = self.preprocessing(
return_batch[x_name], uttid_list,
**self.preprocess_args)
if return_uttid:
return tuple(return_batch.values()), uttid_list
# Doesn't return the names now.
return tuple(return_batch.values())
def _create_batch_asr(self, x_feats_dict, y_feats_dict, uttid_list):
"""Create a OrderedDict for the mini-batch
:param OrderedDict x_feats_dict:
e.g. {"input1": [ndarray, ndarray, ...],
"input2": [ndarray, ndarray, ...]}
:param OrderedDict y_feats_dict:
e.g. {"target1": [ndarray, ndarray, ...],
"target2": [ndarray, ndarray, ...]}
:param: List[str] uttid_list:
Give uttid_list to sort in the same order as the mini-batch
:return: batch, uttid_list
:rtype: Tuple[OrderedDict, List[str]]
"""
# handle single-input and multi-input (paralell) asr mode
xs = list(x_feats_dict.values())
if self.load_output:
ys = list(y_feats_dict.values())
assert len(xs[0]) == len(ys[0]), (len(xs[0]), len(ys[0]))
# get index of non-zero length samples
nonzero_idx = list(
filter(lambda i: len(ys[0][i]) > 0, range(len(ys[0]))))
for n in range(1, len(y_feats_dict)):
nonzero_idx = filter(lambda i: len(ys[n][i]) > 0, nonzero_idx)
else:
# Note(kamo): Be careful not to make nonzero_idx to a generator
nonzero_idx = list(range(len(xs[0])))
if self.sort_in_input_length:
# sort in input lengths based on the first input
nonzero_sorted_idx = sorted(
nonzero_idx, key=lambda i: -len(xs[0][i]))
else:
nonzero_sorted_idx = nonzero_idx
if len(nonzero_sorted_idx) != len(xs[0]):
logging.warning(
"Target sequences include empty tokenid (batch {} -> {}).".
format(len(xs[0]), len(nonzero_sorted_idx)))
# remove zero-length samples
xs = [[x[i] for i in nonzero_sorted_idx] for x in xs]
uttid_list = [uttid_list[i] for i in nonzero_sorted_idx]
x_names = list(x_feats_dict.keys())
if self.load_output:
ys = [[y[i] for i in nonzero_sorted_idx] for y in ys]
y_names = list(y_feats_dict.keys())
# Keeping x_name and y_name, e.g. input1, for future extension
return_batch = OrderedDict([
* [(x_name, x) for x_name, x in zip(x_names, xs)],
* [(y_name, y) for y_name, y in zip(y_names, ys)],
])
else:
return_batch = OrderedDict(
[(x_name, x) for x_name, x in zip(x_names, xs)])
return return_batch, uttid_list
def _get_from_loader(self, filepath, filetype):
"""Return ndarray
In order to make the fds to be opened only at the first referring,
the loader are stored in self._loaders
>>> ndarray = loader.get_from_loader(
... 'some/path.h5:F01_050C0101_PED_REAL', filetype='hdf5')
:param: str filepath:
:param: str filetype:
:return:
:rtype: np.ndarray
"""
if filetype == "hdf5":
# e.g.
# {"input": [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# -> filepath = "some/path.h5", key = "F01_050C0101_PED_REAL"
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = h5py.File(filepath, "r")
self._loaders[filepath] = loader
return loader[key][()]
elif filetype == "sound.hdf5":
# e.g.
# {"input": [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "sound.hdf5",
# -> filepath = "some/path.h5", key = "F01_050C0101_PED_REAL"
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = SoundHDF5File(filepath, "r", dtype="int16")
self._loaders[filepath] = loader
array, rate = loader[key]
return array
elif filetype == "sound":
# e.g.
# {"input": [{"feat": "some/path.wav",
# "filetype": "sound"},
# Assume PCM16
if not self.keep_all_data_on_mem:
array, _ = soundfile.read(filepath, dtype="int16")
return array
if filepath not in self._loaders:
array, _ = soundfile.read(filepath, dtype="int16")
self._loaders[filepath] = array
return self._loaders[filepath]
elif filetype == "npz":
# e.g.
# {"input": [{"feat": "some/path.npz:F01_050C0101_PED_REAL",
# "filetype": "npz",
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = np.load(filepath)
self._loaders[filepath] = loader
return loader[key]
elif filetype == "npy":
# e.g.
# {"input": [{"feat": "some/path.npy",
# "filetype": "npy"},
if not self.keep_all_data_on_mem:
return np.load(filepath)
if filepath not in self._loaders:
self._loaders[filepath] = np.load(filepath)
return self._loaders[filepath]
elif filetype in ["mat", "vec"]:
# e.g.
# {"input": [{"feat": "some/path.ark:123",
# "filetype": "mat"}]},
# In this case, "123" indicates the starting points of the matrix
# load_mat can load both matrix and vector
if not self.keep_all_data_on_mem:
return kaldiio.load_mat(filepath)
if filepath not in self._loaders:
self._loaders[filepath] = kaldiio.load_mat(filepath)
return self._loaders[filepath]
elif filetype == "scp":
# e.g.
# {"input": [{"feat": "some/path.scp:F01_050C0101_PED_REAL",
# "filetype": "scp",
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = kaldiio.load_scp(filepath)
self._loaders[filepath] = loader
return loader[key]
else:
raise NotImplementedError(
"Not supported: loader_type={}".format(filetype))
class SoundHDF5File():
"""Collecting sound files to a HDF5 file
>>> f = SoundHDF5File('a.flac.h5', mode='a')
>>> array = np.random.randint(0, 100, 100, dtype=np.int16)
>>> f['id'] = (array, 16000)
>>> array, rate = f['id']
:param: str filepath:
:param: str mode:
:param: str format: The type used when saving wav. flac, nist, htk, etc.
:param: str dtype:
"""
def __init__(self,
filepath,
mode="r+",
format=None,
dtype="int16",
**kwargs):
self.filepath = filepath
self.mode = mode
self.dtype = dtype
self.file = h5py.File(filepath, mode, **kwargs)
if format is None:
# filepath = a.flac.h5 -> format = flac
second_ext = os.path.splitext(os.path.splitext(filepath)[0])[1]
format = second_ext[1:]
if format.upper() not in soundfile.available_formats():
# If not found, flac is selected
format = "flac"
# This format affects only saving
self.format = format
def __repr__(self):
return '<SoundHDF5 file "{}" (mode {}, format {}, type {})>'.format(
self.filepath, self.mode, self.format, self.dtype)
def create_dataset(self, name, shape=None, data=None, **kwds):
f = io.BytesIO()
array, rate = data
soundfile.write(f, array, rate, format=self.format)
self.file.create_dataset(
name, shape=shape, data=np.void(f.getvalue()), **kwds)
def __setitem__(self, name, data):
self.create_dataset(name, data=data)
def __getitem__(self, key):
data = self.file[key][()]
f = io.BytesIO(data.tobytes())
array, rate = soundfile.read(f, dtype=self.dtype)
return array, rate
def keys(self):
return self.file.keys()
def values(self):
for k in self.file:
yield self[k]
def items(self):
for k in self.file:
yield k, self[k]
def __iter__(self):
return iter(self.file)
def __contains__(self, item):
return item in self.file
def __len__(self, item):
return len(self.file)
def __enter__(self):
return self
def __exit__(self, exc_type, exc_val, exc_tb):
self.file.close()
def close(self):
self.file.close()

@ -11,17 +11,13 @@
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and # See the License for the specific language governing permissions and
# limitations under the License. # limitations under the License.
from collections import OrderedDict
from typing import List from typing import List
import kaldiio
import numpy as np import numpy as np
import soundfile
from deepspeech.frontend.augmentor.augmentation import AugmentationPipeline
from deepspeech.utils.log import Log from deepspeech.utils.log import Log
__all__ = ["pad_list", "pad_sequence", "LoadInputsAndTargets"] __all__ = ["pad_list", "pad_sequence"]
logger = Log(__name__).getlog() logger = Log(__name__).getlog()
@ -89,387 +85,3 @@ def pad_sequence(sequences: List[np.ndarray],
out_tensor[:length, i, ...] = tensor out_tensor[:length, i, ...] = tensor
return out_tensor return out_tensor
class LoadInputsAndTargets():
"""Create a mini-batch from a list of dicts
>>> batch = [('utt1',
... dict(input=[dict(feat='some.ark:123',
... filetype='mat',
... name='input1',
... shape=[100, 80])],
... output=[dict(tokenid='1 2 3 4',
... name='target1',
... shape=[4, 31])]]))
>>> l = LoadInputsAndTargets()
>>> feat, target = l(batch)
:param: str mode: Specify the task mode, "asr" or "tts"
:param: str preprocess_conf: The path of a json file for pre-processing
:param: bool load_input: If False, not to load the input data
:param: bool load_output: If False, not to load the output data
:param: bool sort_in_input_length: Sort the mini-batch in descending order
of the input length
:param: bool use_speaker_embedding: Used for tts mode only
:param: bool use_second_target: Used for tts mode only
:param: dict preprocess_args: Set some optional arguments for preprocessing
:param: Optional[dict] preprocess_args: Used for tts mode only
"""
def __init__(
self,
mode="asr",
preprocess_conf=None,
load_input=True,
load_output=True,
sort_in_input_length=True,
preprocess_args=None,
keep_all_data_on_mem=False, ):
self._loaders = {}
if mode not in ["asr"]:
raise ValueError("Only asr are allowed: mode={}".format(mode))
if preprocess_conf is not None:
self.preprocessing = AugmentationPipeline(preprocess_conf)
logging.warning(
"[Experimental feature] Some preprocessing will be done "
"for the mini-batch creation using {}".format(
self.preprocessing))
else:
# If conf doesn't exist, this function don't touch anything.
self.preprocessing = None
self.mode = mode
self.load_output = load_output
self.load_input = load_input
self.sort_in_input_length = sort_in_input_length
if preprocess_args is None:
self.preprocess_args = {}
else:
assert isinstance(preprocess_args, dict), type(preprocess_args)
self.preprocess_args = dict(preprocess_args)
self.keep_all_data_on_mem = keep_all_data_on_mem
def __call__(self, batch, return_uttid=False):
"""Function to load inputs and targets from list of dicts
:param List[Tuple[str, dict]] batch: list of dict which is subset of
loaded data.json
:param bool return_uttid: return utterance ID information for visualization
:return: list of input token id sequences [(L_1), (L_2), ..., (L_B)]
:return: list of input feature sequences
[(T_1, D), (T_2, D), ..., (T_B, D)]
:rtype: list of float ndarray
:return: list of target token id sequences [(L_1), (L_2), ..., (L_B)]
:rtype: list of int ndarray
"""
x_feats_dict = OrderedDict() # OrderedDict[str, List[np.ndarray]]
y_feats_dict = OrderedDict() # OrderedDict[str, List[np.ndarray]]
uttid_list = [] # List[str]
for uttid, info in batch:
uttid_list.append(uttid)
if self.load_input:
# Note(kamo): This for-loop is for multiple inputs
for idx, inp in enumerate(info["input"]):
# {"input":
# [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# "name": "input1", ...}], ...}
x = self._get_from_loader(
filepath=inp["feat"],
filetype=inp.get("filetype", "mat"))
x_feats_dict.setdefault(inp["name"], []).append(x)
if self.load_output:
for idx, inp in enumerate(info["output"]):
if "tokenid" in inp:
# ======= Legacy format for output =======
# {"output": [{"tokenid": "1 2 3 4"}])
x = np.fromiter(
map(int, inp["tokenid"].split()), dtype=np.int64)
else:
# ======= New format =======
# {"input":
# [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# "name": "target1", ...}], ...}
x = self._get_from_loader(
filepath=inp["feat"],
filetype=inp.get("filetype", "mat"))
y_feats_dict.setdefault(inp["name"], []).append(x)
if self.mode == "asr":
return_batch, uttid_list = self._create_batch_asr(
x_feats_dict, y_feats_dict, uttid_list)
else:
raise NotImplementedError(self.mode)
if self.preprocessing is not None:
# Apply pre-processing all input features
for x_name in return_batch.keys():
if x_name.startswith("input"):
return_batch[x_name] = self.preprocessing(
return_batch[x_name], uttid_list,
**self.preprocess_args)
if return_uttid:
return tuple(return_batch.values()), uttid_list
# Doesn't return the names now.
return tuple(return_batch.values())
def _create_batch_asr(self, x_feats_dict, y_feats_dict, uttid_list):
"""Create a OrderedDict for the mini-batch
:param OrderedDict x_feats_dict:
e.g. {"input1": [ndarray, ndarray, ...],
"input2": [ndarray, ndarray, ...]}
:param OrderedDict y_feats_dict:
e.g. {"target1": [ndarray, ndarray, ...],
"target2": [ndarray, ndarray, ...]}
:param: List[str] uttid_list:
Give uttid_list to sort in the same order as the mini-batch
:return: batch, uttid_list
:rtype: Tuple[OrderedDict, List[str]]
"""
# handle single-input and multi-input (paralell) asr mode
xs = list(x_feats_dict.values())
if self.load_output:
ys = list(y_feats_dict.values())
assert len(xs[0]) == len(ys[0]), (len(xs[0]), len(ys[0]))
# get index of non-zero length samples
nonzero_idx = list(
filter(lambda i: len(ys[0][i]) > 0, range(len(ys[0]))))
for n in range(1, len(y_feats_dict)):
nonzero_idx = filter(lambda i: len(ys[n][i]) > 0, nonzero_idx)
else:
# Note(kamo): Be careful not to make nonzero_idx to a generator
nonzero_idx = list(range(len(xs[0])))
if self.sort_in_input_length:
# sort in input lengths based on the first input
nonzero_sorted_idx = sorted(
nonzero_idx, key=lambda i: -len(xs[0][i]))
else:
nonzero_sorted_idx = nonzero_idx
if len(nonzero_sorted_idx) != len(xs[0]):
logging.warning(
"Target sequences include empty tokenid (batch {} -> {}).".
format(len(xs[0]), len(nonzero_sorted_idx)))
# remove zero-length samples
xs = [[x[i] for i in nonzero_sorted_idx] for x in xs]
uttid_list = [uttid_list[i] for i in nonzero_sorted_idx]
x_names = list(x_feats_dict.keys())
if self.load_output:
ys = [[y[i] for i in nonzero_sorted_idx] for y in ys]
y_names = list(y_feats_dict.keys())
# Keeping x_name and y_name, e.g. input1, for future extension
return_batch = OrderedDict([
* [(x_name, x) for x_name, x in zip(x_names, xs)],
* [(y_name, y) for y_name, y in zip(y_names, ys)],
])
else:
return_batch = OrderedDict(
[(x_name, x) for x_name, x in zip(x_names, xs)])
return return_batch, uttid_list
def _get_from_loader(self, filepath, filetype):
"""Return ndarray
In order to make the fds to be opened only at the first referring,
the loader are stored in self._loaders
>>> ndarray = loader.get_from_loader(
... 'some/path.h5:F01_050C0101_PED_REAL', filetype='hdf5')
:param: str filepath:
:param: str filetype:
:return:
:rtype: np.ndarray
"""
if filetype == "hdf5":
# e.g.
# {"input": [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "hdf5",
# -> filepath = "some/path.h5", key = "F01_050C0101_PED_REAL"
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = h5py.File(filepath, "r")
self._loaders[filepath] = loader
return loader[key][()]
elif filetype == "sound.hdf5":
# e.g.
# {"input": [{"feat": "some/path.h5:F01_050C0101_PED_REAL",
# "filetype": "sound.hdf5",
# -> filepath = "some/path.h5", key = "F01_050C0101_PED_REAL"
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = SoundHDF5File(filepath, "r", dtype="int16")
self._loaders[filepath] = loader
array, rate = loader[key]
return array
elif filetype == "sound":
# e.g.
# {"input": [{"feat": "some/path.wav",
# "filetype": "sound"},
# Assume PCM16
if not self.keep_all_data_on_mem:
array, _ = soundfile.read(filepath, dtype="int16")
return array
if filepath not in self._loaders:
array, _ = soundfile.read(filepath, dtype="int16")
self._loaders[filepath] = array
return self._loaders[filepath]
elif filetype == "npz":
# e.g.
# {"input": [{"feat": "some/path.npz:F01_050C0101_PED_REAL",
# "filetype": "npz",
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = np.load(filepath)
self._loaders[filepath] = loader
return loader[key]
elif filetype == "npy":
# e.g.
# {"input": [{"feat": "some/path.npy",
# "filetype": "npy"},
if not self.keep_all_data_on_mem:
return np.load(filepath)
if filepath not in self._loaders:
self._loaders[filepath] = np.load(filepath)
return self._loaders[filepath]
elif filetype in ["mat", "vec"]:
# e.g.
# {"input": [{"feat": "some/path.ark:123",
# "filetype": "mat"}]},
# In this case, "123" indicates the starting points of the matrix
# load_mat can load both matrix and vector
if not self.keep_all_data_on_mem:
return kaldiio.load_mat(filepath)
if filepath not in self._loaders:
self._loaders[filepath] = kaldiio.load_mat(filepath)
return self._loaders[filepath]
elif filetype == "scp":
# e.g.
# {"input": [{"feat": "some/path.scp:F01_050C0101_PED_REAL",
# "filetype": "scp",
filepath, key = filepath.split(":", 1)
loader = self._loaders.get(filepath)
if loader is None:
# To avoid disk access, create loader only for the first time
loader = kaldiio.load_scp(filepath)
self._loaders[filepath] = loader
return loader[key]
else:
raise NotImplementedError(
"Not supported: loader_type={}".format(filetype))
class SoundHDF5File():
"""Collecting sound files to a HDF5 file
>>> f = SoundHDF5File('a.flac.h5', mode='a')
>>> array = np.random.randint(0, 100, 100, dtype=np.int16)
>>> f['id'] = (array, 16000)
>>> array, rate = f['id']
:param: str filepath:
:param: str mode:
:param: str format: The type used when saving wav. flac, nist, htk, etc.
:param: str dtype:
"""
def __init__(self,
filepath,
mode="r+",
format=None,
dtype="int16",
**kwargs):
self.filepath = filepath
self.mode = mode
self.dtype = dtype
self.file = h5py.File(filepath, mode, **kwargs)
if format is None:
# filepath = a.flac.h5 -> format = flac
second_ext = os.path.splitext(os.path.splitext(filepath)[0])[1]
format = second_ext[1:]
if format.upper() not in soundfile.available_formats():
# If not found, flac is selected
format = "flac"
# This format affects only saving
self.format = format
def __repr__(self):
return '<SoundHDF5 file "{}" (mode {}, format {}, type {})>'.format(
self.filepath, self.mode, self.format, self.dtype)
def create_dataset(self, name, shape=None, data=None, **kwds):
f = io.BytesIO()
array, rate = data
soundfile.write(f, array, rate, format=self.format)
self.file.create_dataset(
name, shape=shape, data=np.void(f.getvalue()), **kwds)
def __setitem__(self, name, data):
self.create_dataset(name, data=data)
def __getitem__(self, key):
data = self.file[key][()]
f = io.BytesIO(data.tobytes())
array, rate = soundfile.read(f, dtype=self.dtype)
return array, rate
def keys(self):
return self.file.keys()
def values(self):
for k in self.file:
yield self[k]
def items(self):
for k in self.file:
yield k, self[k]
def __iter__(self):
return iter(self.file)
def __contains__(self, item):
return item in self.file
def __len__(self, item):
return len(self.file)
def __enter__(self):
return self
def __exit__(self, exc_type, exc_val, exc_tb):
self.file.close()
def close(self):
self.file.close()

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