Merge pull request #629 from PaddlePaddle/align

ctc alignment
pull/695/head
Hui Zhang 4 years ago committed by GitHub
commit 43b52082c3
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23

@ -34,9 +34,12 @@ from deepspeech.models.u2 import U2Model
from deepspeech.training.gradclip import ClipGradByGlobalNormWithLog
from deepspeech.training.scheduler import WarmupLR
from deepspeech.training.trainer import Trainer
from deepspeech.utils import ctc_utils
from deepspeech.utils import error_rate
from deepspeech.utils import layer_tools
from deepspeech.utils import mp_tools
from deepspeech.utils import text_grid
from deepspeech.utils import utility
from deepspeech.utils.log import Log
logger = Log(__name__).getlog()
@ -278,7 +281,15 @@ class U2Trainer(Trainer):
shuffle=False,
drop_last=False,
collate_fn=SpeechCollator.from_config(config))
logger.info("Setup train/valid/test Dataloader!")
# return text token id
config.collator.keep_transcription_text = False
self.align_loader = DataLoader(
test_dataset,
batch_size=config.decoding.batch_size,
shuffle=False,
drop_last=False,
collate_fn=SpeechCollator.from_config(config))
logger.info("Setup train/valid/test/align Dataloader!")
def setup_model(self):
config = self.config
@ -498,6 +509,73 @@ class U2Tester(U2Trainer):
except KeyboardInterrupt:
sys.exit(-1)
@paddle.no_grad()
def align(self):
if self.config.decoding.batch_size > 1:
logger.fatal('alignment mode must be running with batch_size == 1')
sys.exit(1)
# xxx.align
assert self.args.result_file and self.args.result_file.endswith(
'.align')
self.model.eval()
logger.info(f"Align Total Examples: {len(self.align_loader.dataset)}")
stride_ms = self.align_loader.collate_fn.stride_ms
token_dict = self.align_loader.collate_fn.vocab_list
with open(self.args.result_file, 'w') as fout:
# one example in batch
for i, batch in enumerate(self.align_loader):
key, feat, feats_length, target, target_length = batch
# 1. Encoder
encoder_out, encoder_mask = self.model._forward_encoder(
feat, feats_length) # (B, maxlen, encoder_dim)
maxlen = encoder_out.size(1)
ctc_probs = self.model.ctc.log_softmax(
encoder_out) # (1, maxlen, vocab_size)
# 2. alignment
ctc_probs = ctc_probs.squeeze(0)
target = target.squeeze(0)
alignment = ctc_utils.forced_align(ctc_probs, target)
logger.info("align ids", key[0], alignment)
fout.write('{} {}\n'.format(key[0], alignment))
# 3. gen praat
# segment alignment
align_segs = text_grid.segment_alignment(alignment)
logger.info("align tokens", key[0], align_segs)
# IntervalTier, List["start end token\n"]
subsample = utility.get_subsample(self.config)
tierformat = text_grid.align_to_tierformat(
align_segs, subsample, token_dict)
# write tier
align_output_path = os.path.join(
os.path.dirname(self.args.result_file), "align")
tier_path = os.path.join(align_output_path, key[0] + ".tier")
with open(tier_path, 'w') as f:
f.writelines(tierformat)
# write textgrid
textgrid_path = os.path.join(align_output_path,
key[0] + ".TextGrid")
second_per_frame = 1. / (1000. /
stride_ms) # 25ms window, 10ms stride
second_per_example = (
len(alignment) + 1) * subsample * second_per_frame
text_grid.generate_textgrid(
maxtime=second_per_example,
intervals=tierformat,
output=textgrid_path)
def run_align(self):
self.resume_or_scratch()
try:
self.align()
except KeyboardInterrupt:
sys.exit(-1)
def load_inferspec(self):
"""infer model and input spec.

@ -38,21 +38,23 @@ def remove_duplicates_and_blank(hyp: List[int], blank_id=0) -> List[int]:
new_hyp: List[int] = []
cur = 0
while cur < len(hyp):
# add non-blank into new_hyp
if hyp[cur] != blank_id:
new_hyp.append(hyp[cur])
# skip repeat label
prev = cur
while cur < len(hyp) and hyp[cur] == hyp[prev]:
cur += 1
return new_hyp
def insert_blank(label: np.ndarray, blank_id: int=0):
def insert_blank(label: np.ndarray, blank_id: int=0) -> np.ndarray:
"""Insert blank token between every two label token.
"abcdefg" -> "-a-b-c-d-e-f-g-"
Args:
label ([np.ndarray]): label ids, (L).
label ([np.ndarray]): label ids, List[int], (L).
blank_id (int, optional): blank id. Defaults to 0.
Returns:
@ -61,13 +63,13 @@ def insert_blank(label: np.ndarray, blank_id: int=0):
label = np.expand_dims(label, 1) #[L, 1]
blanks = np.zeros((label.shape[0], 1), dtype=np.int64) + blank_id
label = np.concatenate([blanks, label], axis=1) #[L, 2]
label = label.reshape(-1) #[2L]
label = np.append(label, label[0]) #[2L + 1]
label = label.reshape(-1) #[2L], -l-l-l
label = np.append(label, label[0]) #[2L + 1], -l-l-l-
return label
def forced_align(ctc_probs: paddle.Tensor, y: paddle.Tensor,
blank_id=0) -> list:
blank_id=0) -> List[int]:
"""ctc forced alignment.
https://distill.pub/2017/ctc/
@ -77,23 +79,25 @@ def forced_align(ctc_probs: paddle.Tensor, y: paddle.Tensor,
y (paddle.Tensor): label id sequence tensor, 1d tensor (L)
blank_id (int): blank symbol index
Returns:
paddle.Tensor: best alignment result, (T).
List[int]: best alignment result, (T).
"""
y_insert_blank = insert_blank(y, blank_id)
y_insert_blank = insert_blank(y, blank_id) #(2L+1)
log_alpha = paddle.zeros(
(ctc_probs.size(0), len(y_insert_blank))) #(T, 2L+1)
log_alpha = log_alpha - float('inf') # log of zero
# TODO(Hui Zhang): zeros not support paddle.int16
state_path = (paddle.zeros(
(ctc_probs.size(0), len(y_insert_blank)), dtype=paddle.int16) - 1
) # state path
(ctc_probs.size(0), len(y_insert_blank)), dtype=paddle.int32) - 1
) # state path, Tuple((T, 2L+1))
# init start state
log_alpha[0, 0] = ctc_probs[0][y_insert_blank[0]] # Sb
log_alpha[0, 1] = ctc_probs[0][y_insert_blank[1]] # Snb
# TODO(Hui Zhang): VarBase.__getitem__() not support np.int64
log_alpha[0, 0] = ctc_probs[0][int(y_insert_blank[0])] # State-b, Sb
log_alpha[0, 1] = ctc_probs[0][int(y_insert_blank[1])] # State-nb, Snb
for t in range(1, ctc_probs.size(0)):
for s in range(len(y_insert_blank)):
for t in range(1, ctc_probs.size(0)): # T
for s in range(len(y_insert_blank)): # 2L+1
if y_insert_blank[s] == blank_id or s < 2 or y_insert_blank[
s] == y_insert_blank[s - 2]:
candidates = paddle.to_tensor(
@ -106,11 +110,13 @@ def forced_align(ctc_probs: paddle.Tensor, y: paddle.Tensor,
log_alpha[t - 1, s - 2],
])
prev_state = [s, s - 1, s - 2]
log_alpha[t, s] = paddle.max(candidates) + ctc_probs[t][
y_insert_blank[s]]
# TODO(Hui Zhang): VarBase.__getitem__() not support np.int64
log_alpha[t, s] = paddle.max(candidates) + ctc_probs[t][int(
y_insert_blank[s])]
state_path[t, s] = prev_state[paddle.argmax(candidates)]
state_seq = -1 * paddle.ones((ctc_probs.size(0), 1), dtype=paddle.int16)
# TODO(Hui Zhang): zeros not support paddle.int16
state_seq = -1 * paddle.ones((ctc_probs.size(0), 1), dtype=paddle.int32)
candidates = paddle.to_tensor([
log_alpha[-1, len(y_insert_blank) - 1], # Sb

@ -0,0 +1,127 @@
# Copyright (c) 2021 PaddlePaddle Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Dict
from typing import List
from typing import Text
import textgrid
def segment_alignment(alignment: List[int], blank_id=0) -> List[List[int]]:
"""segment ctc alignment ids by continuous blank and repeat label.
Args:
alignment (List[int]): ctc alignment id sequence.
e.g. [0, 0, 0, 1, 1, 1, 2, 0, 0, 3]
blank_id (int, optional): blank id. Defaults to 0.
Returns:
List[List[int]]: token align, segment aligment id sequence.
e.g. [[0, 0, 0, 1, 1, 1], [2], [0, 0, 3]]
"""
# convert alignment to a praat format, which is a doing phonetics
# by computer and helps analyzing alignment
align_segs = []
# get frames level duration for each token
start = 0
end = 0
while end < len(alignment):
while end < len(alignment) and alignment[end] == blank_id: # blank
end += 1
if end == len(alignment):
align_segs[-1].extend(alignment[start:])
break
end += 1
while end < len(alignment) and alignment[end - 1] == alignment[
end]: # repeat label
end += 1
align_segs.append(alignment[start:end])
start = end
return align_segs
def align_to_tierformat(align_segs: List[List[int]],
subsample: int,
token_dict: Dict[int, Text],
blank_id=0) -> List[Text]:
"""Generate textgrid.Interval format from alignment segmentations.
Args:
align_segs (List[List[int]]): segmented ctc alignment ids.
subsample (int): 25ms frame_length, 10ms hop_length, 1/subsample
token_dict (Dict[int, Text]): int -> str map.
Returns:
List[Text]: list of textgrid.Interval text, str(start, end, text).
"""
hop_length = 10 # ms
second_ms = 1000 # ms
frame_per_second = second_ms / hop_length # 25ms frame_length, 10ms hop_length
second_per_frame = 1.0 / frame_per_second
begin = 0
duration = 0
tierformat = []
for idx, tokens in enumerate(align_segs):
token_len = len(tokens)
token = tokens[-1]
# time duration in second
duration = token_len * subsample * second_per_frame
if idx < len(align_segs) - 1:
print(f"{begin:.2f} {begin + duration:.2f} {token_dict[token]}")
tierformat.append(
f"{begin:.2f} {begin + duration:.2f} {token_dict[token]}\n")
else:
for i in tokens:
if i != blank_id:
token = i
break
print(f"{begin:.2f} {begin + duration:.2f} {token_dict[token]}")
tierformat.append(
f"{begin:.2f} {begin + duration:.2f} {token_dict[token]}\n")
begin = begin + duration
return tierformat
def generate_textgrid(maxtime: float,
intervals: List[Text],
output: Text,
name: Text='ali') -> None:
"""Create alignment textgrid file.
Args:
maxtime (float): audio duartion.
intervals (List[Text]): ctc output alignment. e.g. "start-time end-time word" per item.
output (Text): textgrid filepath.
name (Text, optional): tier or layer name. Defaults to 'ali'.
"""
# Download Praat: https://www.fon.hum.uva.nl/praat/
avg_interval = maxtime / (len(intervals) + 1)
print(f"average second/token: {avg_interval}")
margin = 0.0001
tg = textgrid.TextGrid(maxTime=maxtime)
tier = textgrid.IntervalTier(name=name, maxTime=maxtime)
i = 0
for dur in intervals:
s, e, text = dur.split()
tier.add(minTime=float(s) + margin, maxTime=float(e), mark=text)
tg.append(tier)
tg.write(output)
print("successfully generator textgrid {}.".format(output))

@ -79,3 +79,22 @@ def log_add(args: List[int]) -> float:
a_max = max(args)
lsp = math.log(sum(math.exp(a - a_max) for a in args))
return a_max + lsp
def get_subsample(config):
"""Subsample rate from config.
Args:
config (yacs.config.CfgNode): yaml config
Returns:
int: subsample rate.
"""
input_layer = config["model"]["encoder_conf"]["input_layer"]
assert input_layer in ["conv2d", "conv2d6", "conv2d8"]
if input_layer == "conv2d":
return 4
elif input_layer == "conv2d6":
return 6
elif input_layer == "conv2d8":
return 8

@ -0,0 +1,43 @@
#! /usr/bin/env bash
if [ $# != 2 ];then
echo "usage: ${0} config_path ckpt_path_prefix"
exit -1
fi
ngpu=$(echo $CUDA_VISIBLE_DEVICES | awk -F "," '{print NF}')
echo "using $ngpu gpus..."
device=gpu
if [ ngpu == 0 ];then
device=cpu
fi
config_path=$1
ckpt_prefix=$2
ckpt_name=$(basename ${ckpt_prefxi})
mkdir -p exp
batch_size=1
output_dir=${ckpt_prefix}
mkdir -p ${output_dir}
# align dump in `result_file`
# .tier, .TextGrid dump in `dir of result_file`
python3 -u ${BIN_DIR}/alignment.py \
--device ${device} \
--nproc 1 \
--config ${config_path} \
--result_file ${output_dir}/${type}.align \
--checkpoint_path ${ckpt_prefix} \
--opts decoding.batch_size ${batch_size}
if [ $? -ne 0 ]; then
echo "Failed in ctc alignment!"
exit 1
fi
exit 0

@ -30,10 +30,15 @@ fi
if [ ${stage} -le 3 ] && [ ${stop_stage} -ge 3 ]; then
# test ckpt avg_n
CUDA_VISIBLE_DEVICES=4 ./local/test.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} || exit -1
CUDA_VISIBLE_DEVICES=0 ./local/test.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} || exit -1
fi
if [ ${stage} -le 4 ] && [ ${stop_stage} -ge 4 ]; then
# ctc alignment of test data
CUDA_VISIBLE_DEVICES=0 ./local/align.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} || exit -1
fi
if [ ${stage} -le 5 ] && [ ${stop_stage} -ge 5 ]; then
# export ckpt avg_n
CUDA_VISIBLE_DEVICES= ./local/export.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} exp/${ckpt}/checkpoints/${avg_ckpt}.jit
fi

@ -0,0 +1,43 @@
#! /usr/bin/env bash
if [ $# != 2 ];then
echo "usage: ${0} config_path ckpt_path_prefix"
exit -1
fi
ngpu=$(echo $CUDA_VISIBLE_DEVICES | awk -F "," '{print NF}')
echo "using $ngpu gpus..."
device=gpu
if [ ngpu == 0 ];then
device=cpu
fi
config_path=$1
ckpt_prefix=$2
ckpt_name=$(basename ${ckpt_prefxi})
mkdir -p exp
batch_size=1
output_dir=${ckpt_prefix}
mkdir -p ${output_dir}
# align dump in `result_file`
# .tier, .TextGrid dump in `dir of result_file`
python3 -u ${BIN_DIR}/alignment.py \
--device ${device} \
--nproc 1 \
--config ${config_path} \
--result_file ${output_dir}/${type}.align \
--checkpoint_path ${ckpt_prefix} \
--opts decoding.batch_size ${batch_size}
if [ $? -ne 0 ]; then
echo "Failed in ctc alignment!"
exit 1
fi
exit 0

@ -33,6 +33,11 @@ if [ ${stage} -le 3 ] && [ ${stop_stage} -ge 3 ]; then
fi
if [ ${stage} -le 4 ] && [ ${stop_stage} -ge 4 ]; then
# ctc alignment of test data
CUDA_VISIBLE_DEVICES=0 ./local/align.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} || exit -1
fi
if [ ${stage} -le 5 ] && [ ${stop_stage} -ge 5 ]; then
# export ckpt avg_n
CUDA_VISIBLE_DEVICES= ./local/export.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} exp/${ckpt}/checkpoints/${avg_ckpt}.jit
fi

@ -0,0 +1,43 @@
#! /usr/bin/env bash
if [ $# != 2 ];then
echo "usage: ${0} config_path ckpt_path_prefix"
exit -1
fi
ngpu=$(echo $CUDA_VISIBLE_DEVICES | awk -F "," '{print NF}')
echo "using $ngpu gpus..."
device=gpu
if [ ngpu == 0 ];then
device=cpu
fi
config_path=$1
ckpt_prefix=$2
ckpt_name=$(basename ${ckpt_prefxi})
mkdir -p exp
batch_size=1
output_dir=${ckpt_prefix}
mkdir -p ${output_dir}
# align dump in `result_file`
# .tier, .TextGrid dump in `dir of result_file`
python3 -u ${BIN_DIR}/alignment.py \
--device ${device} \
--nproc 1 \
--config ${config_path} \
--result_file ${output_dir}/${type}.align \
--checkpoint_path ${ckpt_prefix} \
--opts decoding.batch_size ${batch_size}
if [ $? -ne 0 ]; then
echo "Failed in ctc alignment!"
exit 1
fi
exit 0

@ -34,6 +34,12 @@ if [ ${stage} -le 3 ] && [ ${stop_stage} -ge 3 ]; then
fi
if [ ${stage} -le 4 ] && [ ${stop_stage} -ge 4 ]; then
# ctc alignment of test data
CUDA_VISIBLE_DEVICES=0 ./local/align.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} || exit -1
fi
if [ ${stage} -le 5 ] && [ ${stop_stage} -ge 5 ]; then
# export ckpt avg_n
CUDA_VISIBLE_DEVICES= ./local/export.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} exp/${ckpt}/checkpoints/${avg_ckpt}.jit
CUDA_VISIBLE_DEVICES= ./local/export.sh ${conf_path} exp/${ckpt}/checkpoints/${avg_ckpt} exp/${ckpt}/checkpoints/${avg_ckpt}.jit
fi

@ -19,7 +19,7 @@ kenlm.done:
apt-get install -y gcc-5 g++-5 && update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-5 50 && update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-5 50
test -d kenlm || wget -O - https://kheafield.com/code/kenlm.tar.gz | tar xz
mkdir -p kenlm/build && cd kenlm/build && cmake .. && make -j4 && make install
cd kenlm && python setup.py install
source venv/bin/activate; cd kenlm && python setup.py install
touch kenlm.done
sox.done:

Loading…
Cancel
Save