diff --git a/.changeset/many-pandas-add.md b/.changeset/many-pandas-add.md
new file mode 100644
index 0000000000..85de7acb35
--- /dev/null
+++ b/.changeset/many-pandas-add.md
@@ -0,0 +1,5 @@
+---
+'svelte': patch
+---
+
+fix: ensure scheduled batch is flushed if not obsolete
diff --git a/packages/svelte/src/internal/client/reactivity/batch.js b/packages/svelte/src/internal/client/reactivity/batch.js
index 82be1d1e8d..7adf3be00c 100644
--- a/packages/svelte/src/internal/client/reactivity/batch.js
+++ b/packages/svelte/src/internal/client/reactivity/batch.js
@@ -716,7 +716,7 @@ export class Batch {
 
 				if (!is_flushing_sync) {
 					queue_micro_task(() => {
-						if (current_batch !== batch) {
+						if (!batches.has(batch) || batch.#pending.size > 0) {
 							// a flushSync happened in the meantime
 							return;
 						}
diff --git a/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/_config.js b/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/_config.js
new file mode 100644
index 0000000000..dea121c456
--- /dev/null
+++ b/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/_config.js
@@ -0,0 +1,15 @@
+import { tick } from 'svelte';
+import { test } from '../../test';
+
+// Ensure that microtask timing doesn't influence whether or not a scheduled batch is flushed.
+// Timing can be such that the current_batch is reset before the scheduled flush runs, which
+// would cause the flush to skip without the fix.
+export default test({
+	async test({ assert, target }) {
+		const [btn] = target.querySelectorAll('button');
+
+		btn.click();
+		await tick();
+		assert.htmlEqual(target.innerHTML, '1 1');
+	}
+});
diff --git a/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/main.svelte b/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/main.svelte
new file mode 100644
index 0000000000..ebfbf4ca4e
--- /dev/null
+++ b/packages/svelte/tests/runtime-runes/samples/async-state-updates-microtask-separated/main.svelte
@@ -0,0 +1,18 @@
+<script>
+	let a = $state(0);
+	let b = $state(0);
+</script>
+
+{#if a}
+	{@const toShow = await a}
+	{toShow}
+	{b}
+{:else}
+	<button
+		onclick={async () => {
+			a = 1;
+			await 1;
+			await 1; // two microtasks needed to get timing right to reproduce the bug
+			b = 1;
+		}}>click</button>
+{/if}