diff --git a/.changeset/lemon-llamas-reflect.md b/.changeset/lemon-llamas-reflect.md
new file mode 100644
index 0000000000..c858403bd4
--- /dev/null
+++ b/.changeset/lemon-llamas-reflect.md
@@ -0,0 +1,5 @@
+---
+'svelte': patch
+---
+
+fix: ensure resume effects are scheduled in topological order
diff --git a/packages/svelte/src/internal/client/reactivity/effects.js b/packages/svelte/src/internal/client/reactivity/effects.js
index 149cbd2d38..428f69281b 100644
--- a/packages/svelte/src/internal/client/reactivity/effects.js
+++ b/packages/svelte/src/internal/client/reactivity/effects.js
@@ -602,17 +602,21 @@ export function resume_effect(effect) {
  */
 function resume_children(effect, local) {
 	if ((effect.f & INERT) === 0) return;
+	effect.f ^= INERT;
+
+	// Ensure the effect is marked as clean again so that any dirty child
+	// effects can schedule themselves for execution
+	if ((effect.f & CLEAN) === 0) {
+		effect.f ^= CLEAN;
+	}
 
 	// If a dependency of this effect changed while it was paused,
-	// apply the change now
+	// schedule the effect to update
 	if (check_dirtiness(effect)) {
-		update_effect(effect);
+		set_signal_status(effect, DIRTY);
+		schedule_effect(effect);
 	}
 
-	// Ensure we toggle the flag after possibly updating the effect so that
-	// each block logic can correctly operate on inert items
-	effect.f ^= INERT;
-
 	var child = effect.first;
 
 	while (child !== null) {
diff --git a/packages/svelte/tests/runtime-runes/samples/transition-each-4/_config.js b/packages/svelte/tests/runtime-runes/samples/transition-each-4/_config.js
new file mode 100644
index 0000000000..a0e29ec8ff
--- /dev/null
+++ b/packages/svelte/tests/runtime-runes/samples/transition-each-4/_config.js
@@ -0,0 +1,35 @@
+import { flushSync } from '../../../../src/index-client.js';
+import { test } from '../../test';
+
+export default test({
+	async test({ assert, raf, target, logs }) {
+		assert.htmlEqual(
+			target.innerHTML,
+			'<button>Toggle</button><div><div>1</div><div>2</div><div>3</div></div>'
+		);
+
+		const btn1 = target.querySelector('button');
+		btn1?.click();
+		flushSync();
+		raf.tick(250);
+
+		assert.htmlEqual(
+			target.innerHTML,
+			'<button>Toggle</button><div style="opacity: 0.5;"><div>1</div><div>2</div><div>3</div></div>'
+		);
+
+		logs.length = 0;
+
+		await Promise.resolve();
+
+		flushSync();
+		raf.tick(500);
+
+		assert.htmlEqual(
+			target.innerHTML,
+			'<button>Toggle</button><div style=""><div>3</div><div>4</div></div>'
+		);
+
+		assert.deepEqual(logs, ['$effect.pre', '$effect.pre', '$effect', '$effect']);
+	}
+});
diff --git a/packages/svelte/tests/runtime-runes/samples/transition-each-4/main.svelte b/packages/svelte/tests/runtime-runes/samples/transition-each-4/main.svelte
new file mode 100644
index 0000000000..d399bee691
--- /dev/null
+++ b/packages/svelte/tests/runtime-runes/samples/transition-each-4/main.svelte
@@ -0,0 +1,39 @@
+<script>
+	function fade(_) {
+		return {
+			duration: 500,
+			css: t => `opacity: ${t}`,
+		}
+	}
+
+	let toggle = $state(true);
+	let items = $state([ 1, 2, 3 ]);
+
+	const handle_toggle = async () => {
+		toggle = false;
+		await Promise.resolve();
+		items = [3, 4];
+		toggle = true;
+	};
+</script>
+
+<button onclick={handle_toggle}>Toggle</button>
+
+{#if toggle}
+	<div transition:fade>
+		{#each items as item (item)}
+		{(() => {
+			$effect(() => {
+				items;
+				console.log('$effect');
+			});
+
+			$effect.pre(() => {
+				items;
+				console.log('$effect.pre');
+			});
+		})()}
+			<div>{item}</div>
+		{/each}
+	</div>
+{/if}